nf-core/filtlong @ 0.0.0-6c4ed3a
Summary
Filtlong filters long reads based on quality measures or short read data.
Get started
Add the following snippet to your workflow script to include this module.
include { FILTLONG } from 'nf-core/filtlong'
License
MIT License
Process
Name
|
FILTLONG |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
shortreads
file
|
fastq file *.{fq,fastq,fq.gz,fastq.gz}
|
longreads
file
|
fastq file *.{fq,fastq,fq.gz,fastq.gz}
|
Output
3 channels
#1
log
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.log
file
|
Standard error logging file containing summary statistics *.log
|
#2
reads
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.fastq.gz
file
|
Filtered (compressed) fastq file *.fastq.gz
|
#3
versions_filtlong
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
filtlong
string
|
The tool name |
filtlong --version | sed -e "s/Filtlong v//g"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| filtlong | Filtlong is a tool for filtering long reads. It can take a set of long reads and produce a smaller, better subset. It uses both read length (longer is better) and read identity (higher is better) when choosing which reads pass the filter. | https://anaconda.org/bioconda/filtlong |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:17:26 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Ffiltlong/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/filtlong/blobs/sha256:2973ef01737e91e6992fcc846ee3184706329e334bcb67c19e395299b1bd4f6b |
| Size | 2.8 KB |
| Checksum | sha256:2973ef01737e91e6992fcc846ee3184706329e334bcb67c19e395299b1bd4f6b |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:17:26 (UTC) | 1 | 2.8 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:12:14 (UTC) | 1 | 2.9 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:01:13 (UTC) | 1 | 2.8 KB |