nf-core/find/concatenate @ 0.0.0-6c4ed3a
Summary
A module for concatenation of gzipped or uncompressed files getting around UNIX terminal argument size
Get started
Add the following snippet to your workflow script to include this module.
include { FIND_CONCATENATE } from 'nf-core/find/concatenate'
License
MIT License
Process
Name
|
FIND_CONCATENATE |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
files_in
file
|
List of either compressed or uncompressed files *
|
Output
4 channels
#1
file_out
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
${prefix}
file
|
Concatenated file. Will be gzipped if ${prefix} ends with ".gz" or inputs are gzipped, will be uncompressed otherwise. ${file_out}
|
#2
versions_find
tuple
${task.process}
string
|
The name of the process |
|---|---|
find
string
|
The name of the tool |
find --version | sed '1!d; s/.* //'
eval
|
The expression to obtain the version of the tool |
#3
versions_pigz
tuple
${task.process}
string
|
The name of the process |
|---|---|
pigz
string
|
The name of the tool |
pigz --version 2>&1 | sed 's/pigz //g'
eval
|
The expression to obtain the version of the tool |
#4
versions_coreutils
tuple
${task.process}
string
|
The name of the process |
|---|---|
coreutils
string
|
The name of the tool |
cat --version | sed '1!d; s/.* //'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| find | GNU find searches the directory tree rooted at each given starting-point by evaluating the given expression | n/a |
| pigz | pigz, which stands for Parallel Implementation of GZip, is a fully functional replacement for gzip that exploits multiple processors and multiple cores to the hilt when compressing data. | n/a |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:17:27 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Ffind%2Fconcatenate/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/find/concatenate/blobs/sha256:3546f6cb18200c9c1b6d7b54a08306421b91d9d8cce9550074bfecfd7e77d86a |
| Size | 3.4 KB |
| Checksum | sha256:3546f6cb18200c9c1b6d7b54a08306421b91d9d8cce9550074bfecfd7e77d86a |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:17:27 (UTC) | 1 | 3.4 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:01:15 (UTC) | 1 | 3.4 KB |