nf-core/gem2/gemindexer @ 0.0.0-6c4ed3a
Summary
Create a GEM index from a FASTA file
Get started
Add the following snippet to your workflow script to include this module.
include { GEM2_GEMINDEXER } from 'nf-core/gem2/gemindexer'
License
MIT License
Process
Name
|
GEM2_GEMINDEXER |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
fasta
file
|
A reference FASTA file to index *.{fasta,fa,fna}
|
Output
3 channels
#1
log
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.log
file
|
The execution log *.log
|
#2
index
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.gem
file
|
The GEM index file *.gem
|
#3
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| gem2 | GEM2 is a high-performance mapping tool. It also provide a unique tool to evaluate mappability. | https://paoloribeca.science/gem |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:20:54 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fgem2%2Fgemindexer/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/gem2/gemindexer/blobs/sha256:fd2a8e524873b360522bd27765749e411b9163236e2be5bc055c5797fc6a9e82 |
| Size | 2.4 KB |
| Checksum | sha256:fd2a8e524873b360522bd27765749e411b9163236e2be5bc055c5797fc6a9e82 |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:20:54 (UTC) | 4 | 2.4 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:13:39 (UTC) | 4 | 2.4 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:05:20 (UTC) | 3 | 2.3 KB |