nf-core/gem2/gemmappability @ 0.0.0-3fc6d40
Summary
Define the mappability of a reference
Get started
Add the following snippet to your workflow script to include this module.
include { GEM2_GEMMAPPABILITY } from 'nf-core/gem2/gemmappability'
License
MIT License
Process
Name
|
GEM2_GEMMAPPABILITY |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
index
file
|
The index created with gem-indexer from the reference FASTA *.gem
|
read_length
integer
|
The read length to define the mappability of |
|---|
Output
2 channels
#1
map
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.mappability
file
|
The resulting mappability file *.mappability
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| gem2 | GEM2 is a high-performance mapping tool. It also provide a unique tool to evaluate mappability. | https://paoloribeca.science/gem |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:13:40 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fgem2%2Fgemmappability/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/gem2/gemmappability/blobs/sha256:0f8d06109d8410d31e3e811da327a1fbbeab0b3c2a5a3f4bf38b2dce85bd5650 |
| Size | 2.4 KB |
| Checksum | sha256:0f8d06109d8410d31e3e811da327a1fbbeab0b3c2a5a3f4bf38b2dce85bd5650 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:20:56 (UTC) | 1 | 2.4 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:13:40 (UTC) | 1 | 2.4 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:05:22 (UTC) | 1 | 2.4 KB |