nf-core/gfaffix @ 0.0.0-3fc6d40
Summary
Collapse walk-preserving shared affixes in variation graphs in GFA format
Get started
Add the following snippet to your workflow script to include this module.
include { GFAFFIX } from 'nf-core/gfaffix'
License
MIT License
Process
Name
|
GFAFFIX |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
gfa
file
|
Variation graph in GFA format *.{gfa}
|
Output
3 channels
#1
gfa
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.gfa
file
|
Non-redundant variation graph in GFA 1.0 format *.{gfa}
|
#2
affixes
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.txt
file
|
Shared affixes in tab-separated values (TSV) text format *.{txt}
|
#3
versions_gfaffix
tuple
${task.process}
string
|
The name of the process |
|---|---|
gfaffix
string
|
The name of the tool |
gfaffix --version | cut -d" " -f2
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| gfaffix | GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure. | https://github.com/marschall-lab/GFAffix |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:13:54 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fgfaffix/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/gfaffix/blobs/sha256:f81cd27dc45e8438642ffa58461f7dce848a1f1b617cda4ddb1f85cd95bba26f |
| Size | 2.4 KB |
| Checksum | sha256:f81cd27dc45e8438642ffa58461f7dce848a1f1b617cda4ddb1f85cd95bba26f |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:21:20 (UTC) | 3 | 2.3 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:13:54 (UTC) | 3 | 2.4 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:06:00 (UTC) | 3 | 2.3 KB |