Nextflow Modules
Showing module(s) with keyword "pangenome"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/gfaffix | Process | gfa graph pangenome variation graph | Collapse walk-preserving shared affixes in variation graphs in GFA format |
| nf-core/graphtyper/genotype | Process | variant vcf bam cram pangenome | Tools for population-scale genotyping using pangenome graphs. |
| nf-core/panacus/histgrowth | Process | statistics pangenome graph gfa genomics | Calculates a coverage histogram from a GFA file and constructs a growth table from this as either a TSV or HTML file |
| nf-core/panacus/visualize | Process | statistics pangenome graph visualization tsv genomics | Create visualizations from a tsv coverage histogram created with panacus. |
| nf-core/scoary | Process | gwas pangenome prokaryote | Use pangenome outputs for GWAS |
| nf-core/smoothxg | Process | gfa graph pangenome variation graph POA | Linearize and simplify variation graph in GFA format using blocked partial order alignment |