Nextflow Registry | nf-core/gt/ltrharvest@0.0.0-6c4ed3a

nf-core/gt/ltrharvest @ 0.0.0-6c4ed3a

Predicts LTR retrotransposons using GenomeTools gt-ltrharvest utility

Latest version: 0.0.0-6c4ed3a

Total downloads: 9

Source: nf-core/modules

Authors: @GallVp

Maintainers: @GallVp

Predicts LTR retrotransposons using GenomeTools gt-ltrharvest utility

Add the following snippet to your workflow script to include this module.

include { GT_LTRHARVEST } from 'nf-core/gt/ltrharvest'

MIT License

Process

`Name`	`GT_LTRHARVEST`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`index` directory	Folder containing the suffixerator index files `suffixerator`

Output 5 channels

#1 gff3 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`*.gff3` file	GFF3 output when `-tabout no` argument is present `*.gff3`

#2 fasta tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`$out_name` file	FASTA output when `-out` argument is present `*.{fa,fsa,fasta}`

#3 tabout tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`*.tabout` file	Old tabular output by default or when `-tabout yes` argument is present `*.tabout`

#4 versions

`versions.yml` file	File containing software versions `versions.yml`

#5 inner_fasta tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`$outinner_name` file	FASTA output for inner regions when `-outinner` argument is present `*.{fa,fsa,fasta}`

Tool	Description	Homepage
gt	The GenomeTools genome analysis system	https://genometools.org/index.html

Version	0.0.0-6c4ed3a
Commit ID	6c4ed3a220310b905a1fc9d04f05be2e0837142b
Release Date	23 Apr 2026 15:23:03 (UTC)
Download URL	https://registry.nextflow.io/api/v1/modules/nf-core%2Fgt%2Fltrharvest/0.0.0-6c4ed3a/download
OCI Store URL	https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/gt/ltrharvest/blobs/sha256:247e6d0289ca5e4bbc1418b63defd12068bea0ebfe4dca7acebb9611293d4679
Size	3.3 KB
Checksum	sha256:247e6d0289ca5e4bbc1418b63defd12068bea0ebfe4dca7acebb9611293d4679
Downloads	3

Version	Date	Downloads	Size
0.0.0-6c4ed3a	23 Apr 2026 15:23:03 (UTC)	3	3.3 KB
0.0.0-3fc6d40	22 Apr 2026 15:15:40 (UTC)	3	3.3 KB
0.0.0-0c7146d	08 Apr 2026 19:07:14 (UTC)	3	3.3 KB