Nextflow Modules
Showing module(s) with keyword "repeat"
| Module | Keywords | Description |
|---|---|---|
| nf-core/gt/ltrharvest | genomics genome annotation repeat transposons retrotransposons | Predicts LTR retrotransposons using GenomeTools gt-ltrharvest utility |
| nf-core/ltrfinder | genomics annotation parallel repeat long terminal retrotransposon retrotransposon | Finds full-length LTR retrotranspsons in genome sequences using the parallel version of LTR_Finder |
| nf-core/ltrharvest | genomics genome annotation repeat transposons retrotransposons | Predicts LTR retrotransposons using the parallel version of GenomeTools gt-ltrharvest utility included in the EDTA toolchain |
| nf-core/ltrretriever/lai | genomics annotation repeat long terminal retrotransposon retrotransposon stats qc | Estimates the mean LTR sequence identity in the genome. The input genome fasta should have short alphanumeric IDs without comments |
| nf-core/ltrretriever/ltrretriever | genomics annotation repeat long terminal repeat retrotransposon | Identifies LTR retrotransposons using LTR_retriever |
| nf-core/repeatmasker/repeatmasker | genome annotation repeat mask | Screening DNA sequences for interspersed repeats and low complexity DNA sequences |
| nf-core/repeatmodeler/builddatabase | genomics fasta repeat | Create a database for RepeatModeler |
| nf-core/repeatmodeler/repeatmodeler | genomics fasta repeat transposable element | Performs de novo transposable element (TE) family identification with RepeatModeler |