nf-core/gunc/mergecheckm @ 0.0.0-6c4ed3a
Summary
Merging of CheckM and GUNC results in one summary table
Get started
Add the following snippet to your workflow script to include this module.
include { GUNC_MERGECHECKM } from 'nf-core/gunc/mergecheckm'
License
MIT License
Process
Name
|
GUNC_MERGECHECKM |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
gunc_file
file
|
Path of a gunc_scores.tsv file (mandatory) *.{bam,cram,sam}
|
checkm_file
file
|
Output TSV from CheckM qa (ideally with -o 2 extended format) (mandatory) *.{bam,cram,sam}
|
Output
2 channels
#1
tsv
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.tsv
file
|
Merged checkm/gunc results in TSV format *.tsv
|
#2
versions_gunc
tuple
${task.process}
string
|
The name of the process |
|---|---|
gunc
string
|
The name of the tool |
gunc --version
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| gunc | Python package for detection of chimerism and contamination in prokaryotic genomes. | https://grp-bork.embl-community.io/gunc/ |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:23:13 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fgunc%2Fmergecheckm/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/gunc/mergecheckm/blobs/sha256:c674575fc55b7c8e0d16efd36255a9dc1c6cb67e84154cffc48357c4a85bbde1 |
| Size | 2.9 KB |
| Checksum | sha256:c674575fc55b7c8e0d16efd36255a9dc1c6cb67e84154cffc48357c4a85bbde1 |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:23:13 (UTC) | 4 | 2.9 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:08:13 (UTC) | 3 | 2.9 KB |