Nextflow Modules
Showing module(s) with keyword "summary"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/assemblyscan | Process | assembly statistics summary json | Assembly summary statistics in JSON format |
| nf-core/bismark/summary | Process | bismark qc methylation 5mC methylseq bisulphite bisulfite report summary | Uses Bismark report files of several samples in a run folder to generate a graphical summary HTML report. |
| nf-core/custom/collectstats | Process | stats collect summary qc | Collects per-sample read-processing statistics (trimming, decontamination, alignment, feature counting, and optionally taxonomy/function summaries) from a set of heterogeneous log/table files into a single overall-stats table per run. |
| nf-core/custom/summarisetelomereestimation | Process | telomere summary telseq telogator2 telomerehunter | Normalise and combine telomere length and content estimates from telseq, telogator2, and telomerehunter into a unified summary |
| nf-core/fastqscan | Process | fastq summary statistics | FASTQ summary statistics in JSON format |
| nf-core/gfatools/stat | Process | summary statistics gfa rgfa graph genomics | Summary statistics for GFA files |
| nf-core/gunc/mergecheckm | Process | gunc checkm summary prokaryote assembly genome quality control chimeras | Merging of CheckM and GUNC results in one summary table |
| nf-core/hmmer/hmmstat | Process | hidden markov model HMM hmmer statistics profile summary | display summary statistics for each profile HMM in an HMM database file |
| nf-core/octopusv/plot | Process | summary structural variant statistics plot | Plot structural variant statistics using octopusv stat output |
| nf-core/pygenprop/info | Process | genome properties functional annotation interproscan pathway analysis micromeda summary | Display a summary of the contents of a Micromeda file, including the number of samples, genome property assignments, step assignments, InterProScan matches, and protein sequences. |
| nf-core/utils_nfschema_plugin | Workflow | validation JSON schema plugin parameters summary | Run nf-schema to validate parameters and create a summary of changed parameters |