nf-core/gunc/run @ 0.0.0-0c7146d
Summary
Detection of Chimerism and Contamination in Prokaryotic Genomes
Get started
Add the following snippet to your workflow script to include this module.
include { GUNC_RUN } from 'nf-core/gunc/run'
License
MIT License
Process
Name
|
GUNC_RUN |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
fasta_files
file
|
A list of FASTA files containing contig (bins) *.fa
|
db
file
|
GUNC database file *.dmnd
|
|---|
Output
3 channels
#1
versions_gunc
tuple
${task.process}
string
|
The name of the process |
|---|---|
gunc
string
|
The name of the tool |
gunc --version
eval
|
The expression to obtain the version of the tool |
#2
all_levels_tsv
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*all_levels.tsv
file
|
Optional output file with results for each taxonomic level *.tsv
|
#3
maxcss_level_tsv
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*maxCSS_level.tsv
file
|
Output file with results for the maximum CSS level *.tsv
|
| Tool | Description | Homepage |
|---|---|---|
| gunc | Python package for detection of chimerism and contamination in prokaryotic genomes. | https://grp-bork.embl-community.io/gunc/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:08:15 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fgunc%2Frun/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/gunc/run/blobs/sha256:0609cb07c7a298bd9e7897a99a9dce75096cc1a437aae715ed5b99723c892cca |
| Size | 2.6 KB |
| Checksum | sha256:0609cb07c7a298bd9e7897a99a9dce75096cc1a437aae715ed5b99723c892cca |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:23:15 (UTC) | 3 | 2.6 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:08:15 (UTC) | 3 | 2.6 KB |