nf-core/haplogrep3/classify @ 0.0.0-3fc6d40
Summary
classification into haplogroups
Get started
Add the following snippet to your workflow script to include this module.
include { HAPLOGREP3_CLASSIFY } from 'nf-core/haplogrep3/classify'
License
MIT License
Process
Name
|
HAPLOGREP3_CLASSIFY |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
inputfile
file
|
valid options are hsd, vcf, or fasta files *.{vcf,vcf.gz,fasta,hsd}
|
Output
2 channels
#1
txt
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.txt
file
|
text file with classification information *.{txt}
|
#2
versions_haplogrep3
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
haplogrep3
string
|
The tool name |
haplogrep3 | sed -n 's/.*Haplogrep 3 \([0-9.]\+\).*/\1/p'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| haplogrep3 | A tool for mtDNA haplogroup classification. | https://github.com/genepi/haplogrep3 |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:16:02 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fhaplogrep3%2Fclassify/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/haplogrep3/classify/blobs/sha256:12825cde83f209b2d671538025eac81221730acbe805a3a6d767164f452d970d |
| Size | 2.3 KB |
| Checksum | sha256:12825cde83f209b2d671538025eac81221730acbe805a3a6d767164f452d970d |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:23:31 (UTC) | 3 | 2.3 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:16:02 (UTC) | 3 | 2.3 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:08:39 (UTC) | 4 | 2.3 KB |