nf-core/hhsuite/hhsearch @ 0.0.0-6c4ed3a
Summary
Sensitive protein sequence searching based on the pairwise alignment of hidden Markov models (HMMs)
Get started
Add the following snippet to your workflow script to include this module.
include { HHSUITE_HHSEARCH } from 'nf-core/hhsuite/hhsearch'
License
MIT License
Process
Name
|
HHSUITE_HHSEARCH |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
aln
file
|
Input multiple sequence alignment file in a2m or a3m format *.{a2m,a2m.gz,a3m,a3m.gz}
|
#2
tuple
meta2
map
|
Groovy Map containing sample information e.g. |
|---|---|
hh_db
directory
|
Input hhsuite formatted database */
|
Output
2 channels
#1
hhr
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.hhr
file
|
Human-readable result file in a custom text format designed by the HH-suite *.hhr
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| hhsuite | HH-suite3 for fast remote homology detection and deep protein annotation | https://github.com/soedinglab/hh-suite |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:23:46 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fhhsuite%2Fhhsearch/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/hhsuite/hhsearch/blobs/sha256:2793adbdc239ba1bf70ab15c6a8f49beae9d6e18299d5d8d4c7b91e5798177c2 |
| Size | 2.7 KB |
| Checksum | sha256:2793adbdc239ba1bf70ab15c6a8f49beae9d6e18299d5d8d4c7b91e5798177c2 |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:23:46 (UTC) | 4 | 2.7 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:16:12 (UTC) | 3 | 2.8 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:08:56 (UTC) | 3 | 2.7 KB |