nf-core/hisat2/build @ 0.0.0-0c7146d
Summary
Builds HISAT2 index for reference genome
Get started
Add the following snippet to your workflow script to include this module.
include { HISAT2_BUILD } from 'nf-core/hisat2/build'
License
MIT License
Process
Name
|
HISAT2_BUILD |
|---|
Input
3 channels
#1
tuple
meta
map
|
Groovy Map containing reference information e.g. [ id:'genome' ] |
|---|---|
fasta
file
|
Reference fasta file *.{fa,fasta,fna}
|
#2
tuple
meta2
map
|
Groovy Map containing reference information e.g. [ id:'genome' ] |
|---|---|
gtf
file
|
Reference gtf annotation file *.{gtf}
|
#3
tuple
meta3
map
|
Groovy Map containing reference information e.g. [ id:'genome' ] |
|---|---|
splicesites
file
|
Splices sites in gtf file *.{txt}
|
Output
2 channels
#1
index
tuple
meta
map
|
Groovy Map containing reference information e.g. [ id:'genome' ] |
|---|---|
hisat2
file
|
HISAT2 genome index file *.ht2
|
#2
versions_hisat2
tuple
${task.process}
string
|
The name of the process |
|---|---|
hisat2
string
|
The name of the tool |
hisat2 --version | sed -n 's/.*version \([^ ]*\).*/\1/p'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| hisat2 | HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) to a population of human genomes as well as to a single reference genome. | https://daehwankimlab.github.io/hisat2/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:09:15 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fhisat2%2Fbuild/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/hisat2/build/blobs/sha256:23f3ddc96ffec250af57c407465abd8d61da10ea5b0f30ab6125edf2a4f6809a |
| Size | 2.8 KB |
| Checksum | sha256:23f3ddc96ffec250af57c407465abd8d61da10ea5b0f30ab6125edf2a4f6809a |
| Downloads | 2 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:24:00 (UTC) | 4 | 2.8 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:16:19 (UTC) | 4 | 2.8 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:09:15 (UTC) | 2 | 2.8 KB |