nf-core/hisat3n/build @ 0.0.0-6c4ed3a
Summary
Build HISAT-3N index for nucleotide conversion sequencing alignment
Get started
Add the following snippet to your workflow script to include this module.
include { HISAT3N_BUILD } from 'nf-core/hisat3n/build'
License
MIT License
Process
Name
|
HISAT3N_BUILD |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing reference information e.g. |
|---|---|
fasta
file
|
Reference FASTA file *.{fa,fasta,fna}
|
Output
2 channels
#1
index
tuple
meta
map
|
Groovy Map containing reference information e.g. |
|---|---|
hisat3n
directory
|
Directory containing HISAT-3N index files hisat3n
|
#2
versions_hisat3n
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
hisat-3n
string
|
The tool name |
hisat-3n --version 2>&1 | head -1 | sed 's/.* //'
eval
|
The command used to generate the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| hisat-3n | HISAT-3N is designed for nucleotide conversion sequencing technologies and implemented based on HISAT2. | http://daehwankimlab.github.io/hisat2/hisat-3n/ |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:24:04 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fhisat3n%2Fbuild/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/hisat3n/build/blobs/sha256:b42d5d30c0b54e588b6302e67baeda0ffb3463fa0a0c75143969f62d94aa907a |
| Size | 2.7 KB |
| Checksum | sha256:b42d5d30c0b54e588b6302e67baeda0ffb3463fa0a0c75143969f62d94aa907a |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:24:04 (UTC) | 3 | 2.7 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:09:21 (UTC) | 3 | 2.7 KB |