Nextflow Registry | nf-core/hmmer/hmmpress@0.0.0-6c4ed3a

nf-core/hmmer/hmmpress @ 0.0.0-6c4ed3a

compress and index profile database for hmmscan

hidden Markov model HMM hmmer hmmpress hmmscan

Latest version: 0.0.0-6c4ed3a

Total downloads: 9

Source: nf-core/modules

Authors: @ochkalova

Maintainers: @ochkalova

compress and index profile database for hmmscan

Add the following snippet to your workflow script to include this module.

include { HMMER_HMMPRESS } from 'nf-core/hmmer/hmmpress'

MIT License

Process

`Name`	`HMMER_HMMPRESS`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`hmmfile` file	HMMER flatfile database of HMM profiles `*`

Output 2 channels

#1 versions

`versions.yml` file	File containing software versions `versions.yml`

#2 compressed_db tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.h3?` list	Binary files with compressed profiles and their index `*.h3?`

Tool	Description	Homepage
hmmer	Biosequence analysis using profile hidden Markov models	http://hmmer.org

Version	0.0.0-6c4ed3a
Commit ID	6c4ed3a220310b905a1fc9d04f05be2e0837142b
Release Date	23 Apr 2026 15:24:22 (UTC)
Download URL	https://registry.nextflow.io/api/v1/modules/nf-core%2Fhmmer%2Fhmmpress/0.0.0-6c4ed3a/download
OCI Store URL	https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/hmmer/hmmpress/blobs/sha256:c9be7e08cedbe067e844855fb90da2f6641f596049a02428ccf8b1f3a2c6c000
Size	2.4 KB
Checksum	sha256:c9be7e08cedbe067e844855fb90da2f6641f596049a02428ccf8b1f3a2c6c000
Downloads	3

Version	Date	Downloads	Size
0.0.0-6c4ed3a	23 Apr 2026 15:24:22 (UTC)	3	2.4 KB
0.0.0-3fc6d40	22 Apr 2026 15:16:32 (UTC)	4	2.4 KB
0.0.0-0c7146d	08 Apr 2026 19:09:44 (UTC)	2	2.4 KB