nf-core/idr @ 0.0.0-0c7146d
Summary
Measures reproducibility of ChIP-seq, ATAC-seq peaks using IDR (Irreproducible Discovery Rate)
Get started
Add the following snippet to your workflow script to include this module.
include { IDR } from 'nf-core/idr'
License
MIT License
Process
Name
|
IDR |
|---|
Input
3 channels
peaks
list
|
BED, narrowPeak or broadPeak files of replicates *
|
|---|
peak_type
string
|
Type of peak file {narrowPeak,broadPeak,bed}
|
|---|
prefix
string
|
Prefix for output files |
|---|
Output
4 channels
#1
idr
*idrValues.txt
file
|
Text file containing IDR values *.{txt}
|
|---|
#2
log
*log.txt
file
|
Log file *.{txt}
|
|---|
#3
png
*.png
file
|
Plot generated by idr *{.png}
|
|---|
#4
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| idr | The IDR (Irreproducible Discovery Rate) framework is a unified approach to measure the reproducibility of findings identified from replicate experiments and provide highly stable thresholds based on reproducibility. | n/a |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:10:34 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fidr/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/idr/blobs/sha256:a54cfc2817397b8068b2d530da1f028f8d32724bffee57f928176374799b691d |
| Size | 2.7 KB |
| Checksum | sha256:a54cfc2817397b8068b2d530da1f028f8d32724bffee57f928176374799b691d |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:24:58 (UTC) | 1 | 2.7 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:16:54 (UTC) | 4 | 2.7 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:10:34 (UTC) | 3 | 2.7 KB |