Nextflow Modules
Showing module(s) with keyword "ATAC-seq"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/ataqv/ataqv | Process | ATAC-seq qc ataqv | ataqv function of a corresponding ataqv tool |
| nf-core/ataqv/mkarv | Process | ataqv ATAC-seq qc mkarv | mkarv function of a corresponding ataqv tool |
| nf-core/genrich | Process | peak-calling ChIP-seq ATAC-seq | Peak-calling for ChIP-seq and ATAC-seq enrichment experiments |
| nf-core/idr | Process | IDR peaks ChIP-seq ATAC-seq | Measures reproducibility of ChIP-seq, ATAC-seq peaks using IDR (Irreproducible Discovery Rate) |
| nf-core/mgatk/call | Process | mitochondria mtDNA variants ATAC-seq | Call mitochondrial variants and generate mitochondrial coverage profiles from an indexed BAM file |
| nf-core/tobias/atacorrect | Process | ATAC-seq footprinting Tn5 bigWig | Correct ATAC-seq signal for Tn5 sequence bias with TOBIAS ATACorrect |
| nf-core/tobias/bindetect | Process | ATAC-seq footprinting transcription factors differential binding | Estimate transcription factor binding and differential binding from ATAC-seq footprint BigWig tracks with TOBIAS BINDetect |
| nf-core/tobias/scorebigwig | Process | ATAC-seq footprinting bigWig transcription factors | Calculate ATAC-seq footprint scores from a BigWig signal track with TOBIAS ScoreBigwig |