nf-core/islandpath @ 0.0.0-3fc6d40
Summary
Genomic island prediction in bacterial and archaeal genomes
Get started
Add the following snippet to your workflow script to include this module.
include { ISLANDPATH } from 'nf-core/islandpath'
License
MIT License
Process
Name
|
ISLANDPATH |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
genome
file
|
Genome file in .gbk or .embl format. pattern: "*.{gbk, embl, gbff}" |
Output
3 channels
#1
gff
tuple
meta
file
|
GFF file listing the predicted genomic islands and their coordinates *.gff
|
|---|---|
*.gff
file
|
GFF file listing the predicted genomic islands and their coordinates *.gff
|
#2
log
Dimob.log
file
|
Log file of the islandpath run *.log
|
|---|
#3
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| islandpath | IslandPath-DIMOB is a standalone software to predict genomic islands (GIs - clusters of genes in prokaryotic genomes of probable horizontal origin) in bacterial and archaeal genomes based on the presence of dinucleotide biases and mobility genes. | https://github.com/brinkmanlab/islandpath |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:18:07 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fislandpath/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/islandpath/blobs/sha256:7a5cd4c3bae232df002f87f5dc16d859825e9aff6ab3110c0da4b7183f202f42 |
| Size | 2.4 KB |
| Checksum | sha256:7a5cd4c3bae232df002f87f5dc16d859825e9aff6ab3110c0da4b7183f202f42 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:26:04 (UTC) | 4 | 2.4 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:18:07 (UTC) | 3 | 2.4 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:11:04 (UTC) | 3 | 2.4 KB |