Nextflow Modules
Showing module(s) with keyword "genomes"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/deepbgc/download | Process | database download BGC biosynthetic gene cluster deep learning neural network random forest genomes bacteria fungi | Database download module for DeepBGC which detects BGCs in bacterial and fungal genomes using deep learning. |
| nf-core/deepbgc/pipeline | Process | BGC biosynthetic gene cluster deep learning neural network random forest genomes bacteria fungi | DeepBGC detects BGCs in bacterial and fungal genomes using deep learning. |
| nf-core/islandpath | Process | genomes genomic islands prediction | Genomic island prediction in bacterial and archaeal genomes |
| nf-core/rundbcan/cazymeannotation | Process | dbCAN download CAZyme CAZyme gene Cluster genomes | CAZyme annotation module for the dbcan pipeline. This module is used to annotate carbohydrate-active enzymes (CAZymes) from genomic data using the dbCAN annotation tool. |
| nf-core/rundbcan/database | Process | dbCAN download CAZyme CAZyme gene Cluster genomes | command from run_dbcan to prepare the database for dbCAN annotation. |
| nf-core/rundbcan/easycgc | Process | dbCAN download CAZyme CAZyme gene Cluster genomes | CGC annotation module for the dbcan pipeline. This module is used to annotate carbohydrate-active enzymes (CAZymes) from genomic data using the dbCAN annotation tool. |
| nf-core/rundbcan/easysubstrate | Process | dbCAN download CAZyme CAZyme gene Cluster genomes | Substrate annotation module for the dbcan pipeline. This module is used to annotate carbohydrate-active enzymes (CAZymes) from genomic data using the dbCAN annotation tool. |
| nf-core/sylph/sketchgenomes | Process | profile metagenomics sylph classification genomes sketch | Sylph profile command for taxonoming profiling of genomes |