nf-core/jvarkit/dict2bed @ 0.0.0-3fc6d40
Summary
Extract BED file from hts files containing a dictionary (VCF,BAM, CRAM, DICT, etc...)
Get started
Add the following snippet to your workflow script to include this module.
include { JVARKIT_DICT2BED } from 'nf-core/jvarkit/dict2bed'
License
MIT License
Process
Name
|
JVARKIT_DICT2BED |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing dict file information e.g. [ id:'test_reference' ] |
|---|---|
dict_files
file
|
File(s) containing a dictionary VCF/BCF/BAM/DICT etc... *.{vcf,bcf,vcf.gz,bcf.gz,dict,fai,bam,cram,interval_list}
|
Output
2 channels
#1
bed
tuple
meta
map
|
Groovy Map containing VCF information e.g. [ id:'test', single_end:false ] |
|---|---|
*.bed
file
|
BED output file *.{vcf,bcf,vcf.gz,bcf.gz}
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| jvarkit | Java utilities for Bioinformatics. | https://github.com/lindenb/jvarkit |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:18:23 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fjvarkit%2Fdict2bed/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/jvarkit/dict2bed/blobs/sha256:ceb77f10756a2719c19ad21253dae8c73d4e4efc23ad2147892a5469235115bd |
| Size | 2.5 KB |
| Checksum | sha256:ceb77f10756a2719c19ad21253dae8c73d4e4efc23ad2147892a5469235115bd |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:26:23 (UTC) | 3 | 2.5 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:18:23 (UTC) | 3 | 2.5 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:12:13 (UTC) | 2 | 2.4 KB |