nf-core/kaiju/kaiju2krona @ 0.0.0-c0c2de1
Summary
Convert Kaiju's tab-separated output file into a tab-separated text file which can be imported into Krona.
Get started
Add the following snippet to your workflow script to include this module.
include { KAIJU_KAIJU2KRONA } from 'nf-core/kaiju/kaiju2krona'
License
MIT License
Process
Name
|
KAIJU_KAIJU2KRONA |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
tsv
file
|
Kaiju tab-separated output file *.{tsv,txt}
|
db
file
|
Kaiju database file |
|---|
Output
2 channels
#1
txt
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.txt
file
|
Krona text-based input file converted from Kaiju report *.{txt,krona}
|
#2
versions_kaiju
tuple
${task.process}
string
|
The name of the process |
|---|---|
kaiju
string
|
The name of the tool |
kaiju -h 2>&1 | sed -n 1p | sed 's/^.*Kaiju //'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| kaiju | Fast and sensitive taxonomic classification for metagenomics | https://kaiju.binf.ku.dk/ |
| Version | 0.0.0-c0c2de1 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 19 Apr 2026 15:00:11 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fkaiju%2Fkaiju2krona/0.0.0-c0c2de1/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/kaiju/kaiju2krona/blobs/sha256:eaa4f0bda7a0874b45a2b75b61cbab885af35b603798685ea6c7d25592fe8d61 |
| Size | 2.6 KB |
| Checksum | sha256:eaa4f0bda7a0874b45a2b75b61cbab885af35b603798685ea6c7d25592fe8d61 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:26:34 (UTC) | 2 | 2.6 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:18:32 (UTC) | 2 | 2.6 KB | |
| 0.0.0-e18a462 | 20 Apr 2026 15:00:21 (UTC) | 2 | 2.6 KB | |
| 0.0.0-c0c2de1 | 19 Apr 2026 15:00:11 (UTC) | 3 | 2.6 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:12:26 (UTC) | 2 | 2.4 KB |