nf-core/kalign/align @ 0.0.0-6c4ed3a
Summary
Aligns sequences using kalign
Get started
Add the following snippet to your workflow script to include this module.
include { KALIGN_ALIGN } from 'nf-core/kalign/align'
License
MIT License
Process
Name
|
KALIGN_ALIGN |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test'] |
|---|---|
fasta
file
|
Input sequences in FASTA format. May be gzipped or uncompressed. *.{fa,fasta}{.gz,}
|
compress
boolean
|
Flag representing whether the output MSA should be compressed. Set to true to enable/false to disable compression. Compression is done using pigz, and is multithreaded. |
|---|
Output
3 channels
#1
alignment
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.aln{.gz,}
file
|
Alignment file. May be gzipped or uncompressed, depending on if *.{aln}{.gz,}
|
#2
versions_pigz
tuple
${task.process}
string
|
The name of the process |
|---|---|
pigz
string
|
The name of the tool |
pigz --version 2>&1 | sed "s/^.*pigz[[:space:]]*//"
eval
|
The expression to obtain the version of the tool |
#3
versions_kalign
tuple
${task.process}
string
|
The name of the process |
|---|---|
kalign
string
|
The name of the tool |
kalign -v | sed "s/^.*kalign[[:space:]]*//"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| kalign | Kalign is a fast and accurate multiple sequence alignment algorithm. | https://msa.sbc.su.se/cgi-bin/msa.cgi |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:26:40 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fkalign%2Falign/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/kalign/align/blobs/sha256:8fb1f1bf68896e07300bd91a28fe1151343825ca93f8d55f928919e59c2e34a7 |
| Size | 2.7 KB |
| Checksum | sha256:8fb1f1bf68896e07300bd91a28fe1151343825ca93f8d55f928919e59c2e34a7 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:26:40 (UTC) | 3 | 2.7 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:18:37 (UTC) | 3 | 2.8 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:12:34 (UTC) | 4 | 2.7 KB |