nf-core/kallistobustools/ref @ 0.0.0-3fc6d40
Summary
index creation for kb count quantification of single-cell data.
Get started
Add the following snippet to your workflow script to include this module.
include { KALLISTOBUSTOOLS_REF } from 'nf-core/kallistobustools/ref'
License
MIT License
Process
Name
|
KALLISTOBUSTOOLS_REF |
|---|
Input
3 channels
fasta
file
|
Genomic DNA fasta file *.{fasta,fasta.gz}
|
|---|
gtf
file
|
Genomic gtf file *.{gtf,gtf.gz}
|
|---|
workflow_mode
string
|
String value defining workflow to use, can be one of "standard", "nac", "lamanno" (obsolete) {standard,lamanno,nac}
|
|---|
Output
7 channels
#1
t2g
t2g.txt
file
|
Transcript to gene table *t2g.{txt}
|
|---|
#2
cdna
cdna.fa
file
|
cDNA fasta file *cdna.{fa}
|
|---|
#3
index
kb_ref_out.idx
file
|
kb ref index file *kb_ref_out.idx
|
|---|
#4
intron
intron.fa
file
|
Intron fasta file *intron.{fa}
|
|---|
#5
cdna_t2c
cdna_t2c.txt
file
|
cDNA transcript to capture file *cdna_t2c.{txt}
|
|---|
#6
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
#7
intron_t2c
intron_t2c.txt
file
|
Intron transcript to capture file *intron_t2c.{txt}
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| kb | kallisto|bustools (kb) is a tool developed for fast and efficient processing of single-cell OMICS data. | https://www.kallistobus.tools/ |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:18:42 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fkallistobustools%2Fref/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/kallistobustools/ref/blobs/sha256:68de93be7710fa274d8698fd10ed2a60130c7bcd3dc2d5feb93bc89b18dc5427 |
| Size | 2.9 KB |
| Checksum | sha256:68de93be7710fa274d8698fd10ed2a60130c7bcd3dc2d5feb93bc89b18dc5427 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:26:45 (UTC) | 3 | 2.9 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:18:42 (UTC) | 3 | 2.9 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:12:41 (UTC) | 2 | 2.9 KB |