Nextflow Registry | nf-core/khmer/uniquekmers@0.0.0-0c7146d

nf-core/khmer/uniquekmers @ 0.0.0-0c7146d

In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more

khmer k-mer effective genome size

Latest version: 0.0.0-6c4ed3a

Total downloads: 9

Source: nf-core/modules

Authors: @JoseEspinosa

Maintainers: @JoseEspinosa

In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more

Add the following snippet to your workflow script to include this module.

include { KHMER_UNIQUEKMERS } from 'nf-core/khmer/uniquekmers'

MIT License

Process

`Name`	`KHMER_UNIQUEKMERS`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`fasta` file	fasta file `*.{fa,fasta}`

`kmer_size` integer	k-mer size to use

Output 3 channels

#1 kmers tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`*.kmers.txt` file	Text file containing number of kmers `*.kmers.txt`

#2 report tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`*.report.txt` file	Text file containing unique-kmers.py execution report `*.report.txt`

#3 versions

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
khmer	khmer k-mer counting library	https://github.com/dib-lab/khmer

Version	0.0.0-0c7146d
Commit ID	6c4ed3a220310b905a1fc9d04f05be2e0837142b
Release Date	08 Apr 2026 19:12:49 (UTC)
Download URL	https://registry.nextflow.io/api/v1/modules/nf-core%2Fkhmer%2Funiquekmers/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/khmer/uniquekmers/blobs/sha256:7b934f4e978324b58002ed2aa782e930a8e3f18c228f437d09223b6e55c58ddd
Size	2.4 KB
Checksum	sha256:7b934f4e978324b58002ed2aa782e930a8e3f18c228f437d09223b6e55c58ddd
Downloads	3

Version	Date	Downloads	Size
0.0.0-6c4ed3a	23 Apr 2026 15:26:51 (UTC)	3	2.4 KB
0.0.0-3fc6d40	22 Apr 2026 15:18:48 (UTC)	3	2.4 KB
0.0.0-0c7146d	08 Apr 2026 19:12:49 (UTC)	3	2.4 KB