Nextflow Modules
Showing module(s) with keyword "khmer"
| Module | Keywords | Description |
|---|---|---|
| nf-core/khmer/normalizebymedian | digital normalization khmer k-mer counting | Module that calls normalize-by-median.py from khmer. The module can take a mix of paired end (interleaved) and single end reads. If both types are provided, only a single file with single ends is possible. |
| nf-core/khmer/trimlowabund | quality control genomics filtering reads khmer k-mer | Removes low abundance k-mers from FASTA/FASTQ files |
| nf-core/khmer/uniquekmers | khmer k-mer effective genome size | In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more |