nf-core/krakenuniq/build @ 0.0.0-0c7146d
Summary
Download and build (custom) KrakenUniq databases
Get started
Add the following snippet to your workflow script to include this module.
include { KRAKENUNIQ_BUILD } from 'nf-core/krakenuniq/build'
License
MIT License
Process
Name
|
KRAKENUNIQ_BUILD |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
custom_library_dir
directory
|
Optional directory containing custom fasta files for database build *
|
custom_taxonomy_dir
directory
|
Optional directory containing custom taxonomy files for database build *
|
custom_seqid2taxid
file
|
custom seqid2taxid |
keep_intermediate
boolean
|
Keep intermediate files that are not used by the database itself true|false
|
|---|
Output
2 channels
#1
db
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
${prefix}/
directory
|
Directory containing KrakenUniq database */
|
#2
versions_krakenuniq
tuple
${task.process}
string
|
The name of the process |
|---|---|
krakenuniq
string
|
The name of the tool |
krakenuniq --version | sed '1!d;s/KrakenUniq version //'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| krakenuniq | Metagenomics classifier with unique k-mer counting for more specific results | https://github.com/fbreitwieser/krakenuniq |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | c4ed7fdd281d290c622c5d93fa173effc0217fdb |
| Release Date | 08 Apr 2026 19:13:24 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fkrakenuniq%2Fbuild/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/krakenuniq/build/blobs/sha256:d29cea17e21bd9c74902c6c7f8968360636e1ddba472eed0585e55c62a1f72e5 |
| Size | 3.4 KB |
| Checksum | sha256:d29cea17e21bd9c74902c6c7f8968360636e1ddba472eed0585e55c62a1f72e5 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-c4ed7fd | 27 Apr 2026 15:00:20 (UTC) | 0 | 3.7 KB | |
| 0.0.0-70ea099 | 26 Apr 2026 15:00:08 (UTC) | 0 | 3.7 KB | |
| 0.0.0-6c4ed3a | 23 Apr 2026 15:27:19 (UTC) | 5 | 3.4 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:19:03 (UTC) | 3 | 3.5 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:13:24 (UTC) | 3 | 3.4 KB |