nf-core/krona/ktimporttaxonomy @ 0.0.0-6c4ed3a
Summary
KronaTools Import Taxonomy imports taxonomy classifications and produces an interactive Krona plot.
Get started
Add the following snippet to your workflow script to include this module.
include { KRONA_KTIMPORTTAXONOMY } from 'nf-core/krona/ktimporttaxonomy'
License
MIT License
Name
|
KRONA_KTIMPORTTAXONOMY |
|---|
meta
map
|
Groovy Map containing sample information e.g. [ id:'test'] |
|---|---|
report
file
|
A tab-delimited file with taxonomy IDs and (optionally) query IDs, magnitudes, and scores. Query IDs are taken from column 1, taxonomy IDs from column 2, and scores from column 3. Lines beginning with # will be ignored. *.{tsv}
|
taxonomy
file
|
Path to a Krona taxonomy .tab file normally downloaded and generated by krona/ktUpdateTaxonomy. Custom taxonomy files can have any name, but must end in *tab
|
|---|
html
tuple
meta
file
|
A html file containing an interactive krona plot. *.{html}
|
|---|---|
*.html
file
|
A html file containing an interactive krona plot. *.{html}
|
versions_krona
tuple
${task.process}
string
|
The name of the process |
|---|---|
krona
string
|
The name of the tool |
ktImportTaxonomy | grep -Po '(?<=KronaTools )[0-9.]+'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| krona | Krona Tools is a set of scripts to create Krona charts from several Bioinformatics tools as well as from text and XML files. | https://github.com/marbl/Krona/wiki/KronaTools |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:27:25 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fkrona%2Fktimporttaxonomy/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/krona/ktimporttaxonomy/blobs/sha256:7b5413af8e076fe7e1e8a2f52aa2fdcb29ebe3de432d1c0a430680b0041638d9 |
| Size | 2.7 KB |
| Checksum | sha256:7b5413af8e076fe7e1e8a2f52aa2fdcb29ebe3de432d1c0a430680b0041638d9 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:27:25 (UTC) | 3 | 2.7 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:19:10 (UTC) | 5 | 2.7 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:13:33 (UTC) | 4 | 2.6 KB |