nf-core/krona/ktimporttext @ 0.0.0-6c4ed3a
Summary
Creates a Krona chart from text files listing quantities and lineages.
Get started
Add the following snippet to your workflow script to include this module.
include { KRONA_KTIMPORTTEXT } from 'nf-core/krona/ktimporttext'
License
MIT License
Name
|
KRONA_KTIMPORTTEXT |
|---|
meta
map
|
Groovy Map containing sample information e.g. [ id:'test'] |
|---|---|
report
file
|
Tab-delimited text file. Each line should be a number followed by a list of wedges to contribute to (starting from the highest level). If no wedges are listed (and just a quantity is given), it will contribute to the top level. If the same lineage is listed more than once, the values will be added. Quantities can be omitted if -q is specified. Lines beginning with '#' will be ignored. *.{txt}
|
html
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
*.html
file
|
A html file containing an interactive krona plot. *.{html}
|
versions_krona
tuple
${task.process}
string
|
The name of the process |
|---|---|
krona
string
|
The name of the tool |
ktImportText | grep -Po '(?<=KronaTools )[0-9.]+'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| krona | Krona Tools is a set of scripts to create Krona charts from several Bioinformatics tools as well as from text and XML files. | https://github.com/marbl/Krona/wiki/KronaTools |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:27:26 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fkrona%2Fktimporttext/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/krona/ktimporttext/blobs/sha256:f30ffbab37854d0d81a09a78cc4f831dfb885a3fa93d4e2dad5568b7ca44226c |
| Size | 2.5 KB |
| Checksum | sha256:f30ffbab37854d0d81a09a78cc4f831dfb885a3fa93d4e2dad5568b7ca44226c |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:27:26 (UTC) | 3 | 2.5 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:19:12 (UTC) | 3 | 2.5 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:13:35 (UTC) | 3 | 2.5 KB |