nf-core/ltrfinder @ 0.0.0-3fc6d40
Summary
Finds full-length LTR retrotranspsons in genome sequences using the parallel version of LTR_Finder
Get started
Add the following snippet to your workflow script to include this module.
include { LTRFINDER } from 'nf-core/ltrfinder'
License
MIT License
Process
Name
|
LTRFINDER |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
fasta
file
|
Genome sequences in fasta format *.{fsa,fa,fasta}
|
Output
3 channels
#1
gff
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.gff3
file
|
Annotation in gff3 format *.gff3
|
#2
scn
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.scn
file
|
Annotation in LTRharvest or LTR_FINDER format *.scn
|
#3
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| LTR_FINDER_parallel | A Perl wrapper for LTR_FINDER | https://github.com/oushujun/LTR_FINDER_parallel |
| LTR_Finder | An efficient program for finding full-length LTR retrotranspsons in genome sequences | https://github.com/xzhub/LTR_Finder |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:19:37 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fltrfinder/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/ltrfinder/blobs/sha256:a36d027fb803e615f7d303ee22ec8be178a3e5168ed776c85b02b0a2aef45072 |
| Size | 2.6 KB |
| Checksum | sha256:a36d027fb803e615f7d303ee22ec8be178a3e5168ed776c85b02b0a2aef45072 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:28:07 (UTC) | 3 | 2.6 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:19:37 (UTC) | 3 | 2.6 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:14:39 (UTC) | 3 | 2.6 KB |