Nextflow Registry | nf-core/metamdbg/asm@0.0.0-0c7146d

nf-core/metamdbg/asm @ 0.0.0-0c7146d

Metagenome assembler for long-read sequences (HiFi and ONT).

assembly long reads metagenome metagenome assembler

Latest version: 0.0.0-6c4ed3a

Total downloads: 6

Source: nf-core/modules

Authors: @prototaxites @eit-maxlcummins

Maintainers: @prototaxites

Metagenome assembler for long-read sequences (HiFi and ONT).

Add the following snippet to your workflow script to include this module.

include { METAMDBG_ASM } from 'nf-core/metamdbg/asm'

MIT License

Process

`Name`	`METAMDBG_ASM`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`reads` file	Long read sequence data from ONT or HiFi in fasta format (can be gzipped) `*.{fa,fasta,fa.gz,fasta.gz}`

`input_type` string	Sequencing technology for reads - either "hifi" for PacBio HiFi reads or "ont" for Oxford Nanopore reads.

Output 3 channels

#1 log tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`*.metaMDBG.log` file	Log file describing the metaMDBG run.

#2 contigs tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`*.contigs.fasta.gz` file	Gzipped fasta file containing the assembled contigs from the input reads.

#3 versions_metamdbg tuple

`${task.process}` string	Name of the process
`metamdbg` string	Name of the tool
`metaMDBG \| sed -n "s/.*Version: //p"` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
metamdbg	MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.	https://github.com/GaetanBenoitDev/metaMDBG

Version	0.0.0-0c7146d
Commit ID	6c4ed3a220310b905a1fc9d04f05be2e0837142b
Release Date	08 Apr 2026 19:17:27 (UTC)
Download URL	https://registry.nextflow.io/api/v1/modules/nf-core%2Fmetamdbg%2Fasm/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/metamdbg/asm/blobs/sha256:a58b7607ac3e9f5b9207485f1ece5ebad30b599226639ded407d357c263dc0b2
Size	2.8 KB
Checksum	sha256:a58b7607ac3e9f5b9207485f1ece5ebad30b599226639ded407d357c263dc0b2
Downloads	3

Version	Date	Status	Downloads	Size
0.0.0-6c4ed3a	23 Apr 2026 15:30:16 (UTC)		3	2.8 KB
0.0.0-0c7146d	08 Apr 2026 19:17:27 (UTC)		3	2.8 KB