Nextflow Modules
Showing module(s) with keyword "metagenome"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/checkm2/databasedownload | Process | checkm mag metagenome quality completeness contamination bins | CheckM2 database download |
| nf-core/checkm2/predict | Process | checkm mag metagenome quality completeness contamination bins | CheckM2 bin quality prediction |
| nf-core/checkm/lineagewf | Process | checkm mag metagenome quality isolates microbes single cells completeness contamination bins genome bins | CheckM provides a set of tools for assessing the quality of genomes recovered from isolates, single cells, or metagenomes. |
| nf-core/checkm/qa | Process | checkm mag metagenome quality isolates microbes single cells completeness contamination bins genome bins qa quality assurnce | CheckM provides a set of tools for assessing the quality of genomes recovered from isolates, single cells, or metagenomes. |
| nf-core/checkv/downloaddatabase | Process | checkv checkm mag metagenome quality isolates virus completeness contamination download database | Construct the database necessary for checkv's quality assessment |
| nf-core/checkv/endtoend | Process | checkv checkm mag metagenome quality isolates virus completeness contamination | Assess the quality of metagenome-assembled viral genomes. |
| nf-core/checkv/updatedatabase | Process | checkv checkm mag metagenome quality isolates virus completeness contamination | Construct the database necessary for checkv's quality assessment |
| nf-core/metamdbg/asm | Process | assembly long reads metagenome metagenome assembler | Metagenome assembler for long-read sequences (HiFi and ONT). |
| nf-core/myloasm | Process | assembly metagenome long-read pacbio nanopore | Myloasm is a de novo metagenome assembler for long-read sequencing data. It takes sequencing reads and outputs polished contigs in a single command. |