Nextflow Registry | nf-core/mirtop/gff@0.0.0-0c7146d

nf-core/mirtop/gff @ 0.0.0-0c7146d

mirtop gff generates the GFF3 adapter format to capture miRNA variations

mirna isomir gff

Latest version: 0.0.0-6c4ed3a

Total downloads: 7

Source: nf-core/modules

Authors: @atrigila

Maintainers: @atrigila @lpantano

mirtop gff generates the GFF3 adapter format to capture miRNA variations

Add the following snippet to your workflow script to include this module.

include { MIRTOP_GFF } from 'nf-core/mirtop/gff'

MIT License

Process

`Name`	`MIRTOP_GFF`

Input 3 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`bam` file	Sorted BAM/CRAM/SAM file `*.{bam,cram,sam}`

#2 tuple

`meta2` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`hairpin` file	Hairpin file `*.{fa,fasta}`

#3 tuple

`meta3` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`gtf` file	GTF file `*.{gtf}`
`species` string	Species name of the GTF file

Output 2 channels

#1 gff tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`mirtop/*mirtop.gff` file	GFF file `*.{gff}`

#2 versions

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
mirtop	Small RNA-seq annotation	https://github.com/miRTop/mirtop

Version	0.0.0-0c7146d
Commit ID	6c4ed3a220310b905a1fc9d04f05be2e0837142b
Release Date	08 Apr 2026 19:18:19 (UTC)
Download URL	https://registry.nextflow.io/api/v1/modules/nf-core%2Fmirtop%2Fgff/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/mirtop/gff/blobs/sha256:24e097089804772ecfa3f59cc35969fe96dec8514164c5ebf33f8ee7d25505d0
Size	2.5 KB
Checksum	sha256:24e097089804772ecfa3f59cc35969fe96dec8514164c5ebf33f8ee7d25505d0
Downloads	4

Version	Date	Status	Downloads	Size
0.0.0-6c4ed3a	23 Apr 2026 15:30:52 (UTC)		3	2.5 KB
0.0.0-0c7146d	08 Apr 2026 19:18:19 (UTC)		4	2.5 KB