nf-core/mmseqs/linclust @ 0.0.0-6c4ed3a
Summary
Cluster sequences in linear time using MMSeqs2 linclust.
Get started
Add the following snippet to your workflow script to include this module.
include { MMSEQS_LINCLUST } from 'nf-core/mmseqs/linclust'
License
MIT License
Process
Name
|
MMSEQS_LINCLUST |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
db_input
file
|
Input database |
Output
2 channels
#1
db_cluster
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
${prefix}/
directory
|
a clustered MMseqs2 database |
#2
versions_mmseqs
tuple
${task.process}
string
|
The name of the process |
|---|---|
mmseqs
string
|
The name of the tool |
mmseqs version
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| mmseqs | MMseqs2: ultra fast and sensitive sequence search and clustering suite | https://github.com/soedinglab/MMseqs2 |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:31:56 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fmmseqs%2Flinclust/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/mmseqs/linclust/blobs/sha256:811baa33ce7d5e4b4cfe5ab842044e444d1a51769cd62ef610770822ae319a72 |
| Size | 3.0 KB |
| Checksum | sha256:811baa33ce7d5e4b4cfe5ab842044e444d1a51769cd62ef610770822ae319a72 |
| Downloads | 2 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:31:56 (UTC) | 2 | 3.0 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:18:46 (UTC) | 2 | 3.0 KB |