Nextflow Registry | nf-core/motus/merge@0.0.0-3fc6d40

nf-core/motus/merge @ 0.0.0-3fc6d40

Taxonomic meta-omics profiling using universal marker genes

Latest version: 0.0.0-6c4ed3a

Total downloads: 10

Source: nf-core/modules

Authors: @jfy133

Maintainers: @jfy133

Taxonomic meta-omics profiling using universal marker genes

Add the following snippet to your workflow script to include this module.

include { MOTUS_MERGE } from 'nf-core/motus/merge'

MIT License

Process

`Name`	`MOTUS_MERGE`

Input 3 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test', single_end:false ]`
`input` file	List of output files (more than one) from motus profile, or a single directory containing motus output files.

`db` directory	mOTUs database downloaded by `motus downloadDB` pattern: "db_mOTU/"

`profile_version_yml` file	A single versions.yml file output from motus/profile. motus/merge cannot reconstruct this itself without having the motus database present and configured with the tool so here we take it from what is already reported by the upstream module. `versions.yml`

Output 3 channels

#1 txt tuple

`meta` file	OTU table in txt format, if BIOM format not requested `*.txt`
`*.txt` file	OTU table in txt format, if BIOM format not requested `*.txt`

#2 biom tuple

`meta` file	OTU table in txt format, if BIOM format not requested `*.txt`
`*.biom` file	OTU table in biom format, if BIOM format requested `*.biom`

#3 versions

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
motus	Marker gene-based OTU (mOTU) profiling	https://motu-tool.org/

Version	0.0.0-3fc6d40
Commit ID	6c4ed3a220310b905a1fc9d04f05be2e0837142b
Release Date	22 Apr 2026 15:22:56 (UTC)
Download URL	https://registry.nextflow.io/api/v1/modules/nf-core%2Fmotus%2Fmerge/0.0.0-3fc6d40/download
OCI Store URL	https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/motus/merge/blobs/sha256:772a80eac1cc58f85cf6ea4a22d9ffcb69bbe1130f6a6362ca2057ca6726ebe3
Size	3.1 KB
Checksum	sha256:772a80eac1cc58f85cf6ea4a22d9ffcb69bbe1130f6a6362ca2057ca6726ebe3
Downloads	3

Version	Date	Downloads	Size
0.0.0-6c4ed3a	23 Apr 2026 15:32:13 (UTC)	4	3.1 KB
0.0.0-3fc6d40	22 Apr 2026 15:22:56 (UTC)	3	3.1 KB
0.0.0-0c7146d	08 Apr 2026 19:19:58 (UTC)	3	3.1 KB