nf-core/mtmalign/align @ 0.0.0-6c4ed3a
Summary
Aligns protein structures using mTM-align
Get started
Add the following snippet to your workflow script to include this module.
include { MTMALIGN_ALIGN } from 'nf-core/mtmalign/align'
License
MIT License
Name
|
MTMALIGN_ALIGN |
|---|
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
pdbs
file
|
Input protein structures in PDB format. Files may be gzipped or uncompressed. They should contain exactly one chain! *.{pdb}
|
compress
boolean
|
Flag representing whether the output MSA should be compressed. Set to true to enable/false to disable compression. Compression is done using pigz, and is multithreaded. |
|---|
alignment
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
${prefix}.aln${compress ? '.gz' : ''}
file
|
Alignment in FASTA format. May be gzipped or uncompressed. *.aln{.gz,}
|
structure
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
${prefix}.pdb${compress ? '.gz' : ''}
file
|
Overlaid structures in PDB format. May be gzipped or uncompressed. ${prefix}.pdb{.gz,}
|
versions_pigz
tuple
${task.process}
string
|
The name of the process |
|---|---|
pigz
string
|
The name of the tool |
pigz --version 2>&1 | sed "s/^.*pigz[[:space:]]*//"
eval
|
The expression to obtain the version of the tool |
versions_mtmalign
tuple
${task.process}
string
|
The name of the process |
|---|---|
mtm-align
string
|
The name of the tool |
mtm-align -h | sed -n "s/.*Version \([0-9]*\).*/\1/p"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| mTM-align | Algorithm for structural multiple sequence alignments | http://yanglab.nankai.edu.cn/mTM-align/ |
| pigz | Parallel implementation of the gzip algorithm. | https://zlib.net/pigz/ |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:32:25 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fmtmalign%2Falign/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/mtmalign/align/blobs/sha256:25293e35070f0afa2f78e519bc87c6a1788079468cbfe122fb1fe060e8a3917d |
| Size | 3.4 KB |
| Checksum | sha256:25293e35070f0afa2f78e519bc87c6a1788079468cbfe122fb1fe060e8a3917d |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:32:25 (UTC) | 3 | 3.4 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:23:08 (UTC) | 5 | 3.4 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:20:14 (UTC) | 3 | 3.4 KB |