nf-core/mtnucratio @ 0.0.0-6c4ed3a
Summary
A small Java tool to calculate ratios between MT and nuclear sequencing reads in a given BAM file.
Get started
Add the following snippet to your workflow script to include this module.
include { MTNUCRATIO } from 'nf-core/mtnucratio'
License
MIT License
Name
|
MTNUCRATIO |
|---|
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
bam
file
|
(coordinate) sorted BAM/SAM file *.{bam,sam}
|
mt_id
string
|
Identifier of the contig/chromosome of interest (e.g. chromosome, contig) as in the aligned against reference FASTA file, e.g. mt or chrMT for mitochondria |
|---|
json
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.json
file
|
JSON file, containing metadata map with sample name, tool name and version, and metrics as in txt file *.json
|
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
mtnucratio
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.mtnucratio
file
|
Text file containing metrics (mtreads, mt_cov_avg, nucreads, nuc_cov_avg, mt_nuc_ratio) *.mtnucratio
|
| Tool | Description | Homepage |
|---|---|---|
| mtnucratio | A small tool to determine MT to Nuclear ratios for NGS data. | https://github.com/apeltzer/MTNucRatioCalculator |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:32:26 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fmtnucratio/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/mtnucratio/blobs/sha256:d13aea9761428292b40850b56b822674ab9fbf992ef066e332b49f01cde57d8c |
| Size | 2.6 KB |
| Checksum | sha256:d13aea9761428292b40850b56b822674ab9fbf992ef066e332b49f01cde57d8c |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:32:26 (UTC) | 3 | 2.6 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:23:09 (UTC) | 4 | 2.6 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:20:16 (UTC) | 3 | 2.6 KB |