Nextflow Modules
Showing module(s) with keyword "reads"
| Module | Keywords | Description |
|---|---|---|
| nf-core/khmer/trimlowabund | quality control genomics filtering reads khmer k-mer | Removes low abundance k-mers from FASTA/FASTQ files |
| nf-core/kma/index | alignment kma index database reads | This module wraps the index module of the KMA alignment tool. |
| nf-core/kma/kma | fastq reads alignment kma | Mapping raw reads directly against redundant databases via KMA alignment |
| nf-core/mtnucratio | mtnucratio ratio reads bam mitochondrial to nuclear ratio mitochondria statistics | A small Java tool to calculate ratios between MT and nuclear sequencing reads in a given BAM file. |
| nf-core/seqkit/head | filter subset reads fasta fastq seqkit | Subset FASTA/FASTQ files to some number of sequences |
| nf-core/seqtk/sample | sample fastx reads | Subsample reads from FASTQ files |
| nf-core/wgsim | simulate fasta reads | simulating sequence reads from a reference genome |