nf-core/mudskipper/index @ 0.0.0-0c7146d
Summary
Build and store a gtf index, which is useful for converting genomic BAM/SAM files to transcriptomic BAM/SAM files.
Get started
Add the following snippet to your workflow script to include this module.
include { MUDSKIPPER_INDEX } from 'nf-core/mudskipper/index'
License
MIT License
Process
Name
|
MUDSKIPPER_INDEX |
|---|
Input
1 channel
gtf
file
|
Transcript annotation file. *.{gtf,gff,gff3}
|
|---|
Output
2 channels
#1
index
index/
directory
|
Mudskipper index for running mudskipper conversion tools */
|
|---|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| mudskipper | mudskipper is a tool for converting genomic BAM/SAM files to transcriptomic BAM/RAD files. | https://github.com/OceanGenomics/mudskipper |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:20:20 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fmudskipper%2Findex/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/mudskipper/index/blobs/sha256:a9fad6daef6ef74a0b70fa4e312d62f751f240dca2b702fa0c0e621474cf5561 |
| Size | 2.1 KB |
| Checksum | sha256:a9fad6daef6ef74a0b70fa4e312d62f751f240dca2b702fa0c0e621474cf5561 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:32:28 (UTC) | 3 | 2.1 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:23:12 (UTC) | 3 | 2.1 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:20:20 (UTC) | 3 | 2.1 KB |