|
nf-core/busco/busco
|
quality control
genome
transcriptome
proteome
|
Benchmarking Universal Single Copy Orthologs
|
|
nf-core/busco/download
|
quality control
genome
transcriptome
proteome
|
Download database for BUSCO
|
|
nf-core/busco/generateplot
|
genome
fasta
annotation
busco
transcriptome
quality control
|
BUSCO plot generation tool
|
|
nf-core/busco/plot
|
genome
fasta
annotation
busco
transcriptome
quality control
|
BUSCO summary plot generation using the built-in 'busco --plot' command
|
|
nf-core/gstama/collapse
|
tama_collapse.py
isoseq
nanopore
long-read
transcriptome
gene model
TAMA
|
Collapse redundant transcript models in Iso-Seq data.
|
|
nf-core/mudskipper/bulk
|
bam
transcriptome
transcriptomic
mudskipper
sam
rad
|
Convert genomic BAM/SAM files to transcriptomic BAM/RAD files.
|
|
nf-core/mudskipper/index
|
bam
transcriptome
transcriptomic
index
mudskipper
sam
|
Build and store a gtf index, which is useful for converting genomic BAM/SAM files to transcriptomic BAM/SAM files.
|
|
nf-core/simpleaf/index
|
indexing
transcriptome
gene expression
SimpleAF
|
Indexing of transcriptome for gene expression quantification using SimpleAF
|