Nextflow Modules
Showing module(s) with keyword "transcriptome"
| Module | Keywords | Description |
|---|---|---|
| nf-core/busco/busco | quality control genome transcriptome proteome | Benchmarking Universal Single Copy Orthologs |
| nf-core/busco/download | quality control genome transcriptome proteome | Download database for BUSCO |
| nf-core/busco/generateplot | genome fasta annotation busco transcriptome quality control | BUSCO plot generation tool |
| nf-core/gstama/collapse | tama_collapse.py isoseq nanopore long-read transcriptome gene model TAMA | Collapse redundant transcript models in Iso-Seq data. |
| nf-core/mudskipper/bulk | bam transcriptome transcriptomic mudskipper sam rad | Convert genomic BAM/SAM files to transcriptomic BAM/RAD files. |
| nf-core/mudskipper/index | bam transcriptome transcriptomic index mudskipper sam | Build and store a gtf index, which is useful for converting genomic BAM/SAM files to transcriptomic BAM/SAM files. |
| nf-core/simpleaf/index | indexing transcriptome gene expression SimpleAF | Indexing of transcriptome for gene expression quantification using SimpleAF |