nf-core/nail/search @ 0.0.0-0c7146d
Summary
nail search is a fast and scalable tool for searching protein sequences against protein databases
Get started
Add the following snippet to your workflow script to include this module.
include { NAIL_SEARCH } from 'nf-core/nail/search'
License
MIT License
Name
|
NAIL_SEARCH |
|---|
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
query
file
|
Input query file *.{hmm,fasta,fa,fna}
|
meta2
map
|
Groovy Map containing sample information e.g. |
|---|---|
target
file
|
Input target file *.{fasta,fa,fna}
|
write_align
boolean
|
Flag to save optional alignment output. Specify with 'true' to save. |
|---|
output
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
${prefix}.txt
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] *.{txt}
|
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
alignments
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
${prefix}.ali
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] *.ali
|
target_summary
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
${prefix}.tbl
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] results.tbl
|
| Tool | Description | Homepage |
|---|---|---|
| nail | Profile Hidden Markov Model (pHMM) biological sequence alignment tool | https://github.com/TravisWheelerLab/nail |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:20:47 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fnail%2Fsearch/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/nail/search/blobs/sha256:29e0f88d49249c8074d978a4cb561e708558b7c7d8527eaae7e80b536054e1ca |
| Size | 2.7 KB |
| Checksum | sha256:29e0f88d49249c8074d978a4cb561e708558b7c7d8527eaae7e80b536054e1ca |
| Downloads | 2 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:32:47 (UTC) | 3 | 2.8 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:23:19 (UTC) | 1 | 2.8 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:20:47 (UTC) | 2 | 2.7 KB |