nf-core/openms/textexporter @ 0.0.0-6c4ed3a
Summary
Exports various OpenMS XML formats (featureXML, consensusXML, idXML, mzML) to a human-readable text format.
Get started
Add the following snippet to your workflow script to include this module.
include { OPENMS_TEXTEXPORTER } from 'nf-core/openms/textexporter'
License
MIT License
Process
Name
|
OPENMS_TEXTEXPORTER |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
input_file
file
|
OpenMS data file to export to text format. *.{featureXML,consensusXML,idXML,mzML}
|
Output
2 channels
#1
tsv
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
${prefix}.tsv
file
|
Tab-separated text export of the input data. *.tsv
|
#2
versions_openms
tuple
${task.process}
string
|
The name of the process |
|---|---|
openms
string
|
The name of the tool |
FileInfo --help 2>&1 | sed -nE 's/^Version: ([0-9.]+).*/\1/p'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| openms | OpenMS is an open-source software C++ library for LC-MS data management and analyses | https://openms.de |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:33:50 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fopenms%2Ftextexporter/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/openms/textexporter/blobs/sha256:173eacfe8fa0e5d4009fe539b50ea45912662b525666c84d942137dba1fc4fa5 |
| Size | 2.4 KB |
| Checksum | sha256:173eacfe8fa0e5d4009fe539b50ea45912662b525666c84d942137dba1fc4fa5 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:33:50 (UTC) | 3 | 2.4 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:24:13 (UTC) | 3 | 2.5 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:22:24 (UTC) | 3 | 2.4 KB |