Nextflow Modules
Showing module(s) with keyword "text"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/cooler/dump | Process | dump text cooler | Dump a cooler’s data to a text stream. |
| nf-core/gawk | Process | gawk awk txt text file parsing | If you are like many computer users, you would frequently like to make changes in various text files wherever certain patterns appear, or extract data from parts of certain lines while discarding the rest. The job is easy with awk, especially the GNU implementation gawk. |
| nf-core/jvarkit/vcf2table | Process | vcf bcf text html visualization | Convert VCF to a user friendly table |
| nf-core/openms/textexporter | Process | export openms proteomics text tsv | Exports various OpenMS XML formats (featureXML, consensusXML, idXML, mzML) to a human-readable text format. |
| nf-core/seqkit/fx2tab | Process | fasta fastq text tabular convert | Convert FASTA/Q to tabular format, and provide various information, like sequence length, GC content/GC skew. |
| nf-core/seqkit/tab2fx | Process | fasta fastq text tabular convert | Convert tabular format (first two/three columns) to FASTA/Q format. |