Nextflow Modules
Showing module(s) with keyword "tsv"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/agat/convertspgff2tsv | Process | genome gff gtf conversion tsv | Converts a GFF/GTF file into a TSV file |
| nf-core/annotsv/annotsv | Process | annotation structural variants vcf bed tsv | Annotation and Ranking of Structural Variation |
| nf-core/csvtk/concat | Process | concatenate tsv csv | Concatenate two or more CSV (or TSV) tables into a single table |
| nf-core/csvtk/join | Process | join tsv csv | Join two or more CSV (or TSV) tables by selected fields into a single table |
| nf-core/csvtk/mutate2 | Process | mutate tsv csv | Create a new column from selected fields by awk-like arithmetic/string expressions |
| nf-core/csvtk/sort | Process | sort tsv csv | Sort CSV (or TSV) tables |
| nf-core/csvtk/split | Process | split csv tsv | Splits CSV/TSV into multiple files according to column values |
| nf-core/datavzrd | Process | visualisation tsv csv | Datavzrd is a tool to create visual HTML reports from collections of CSV/TSV tables. |
| nf-core/duckdb/table2parquet | Process | parquet csv tsv conversion | Convert a delimited text table (CSV or TSV, gzipped or not) to Parquet. DuckDB types each column from the first 20480 rows and reads only the empty string as missing. Pass `read_csv` options through `ext.args`, for example `nullstr=['NA','']` for tables written by R. |
| nf-core/fastawindows | Process | genome fasta tsv bed | Quickly compute statistics over a fasta file in windows. |
| nf-core/hmmer/formattsv | Process | hmmer hmmsearch tblout domtblout tsv | Convert HMMER's --tblout/--domtblout output to a clean, properly-delimited TSV |
| nf-core/jvarkit/sam2tsv | Process | sam tsv jvarkit | Convert sam files to tsv files |
| nf-core/knotannotsv | Process | annotation structural variants annotsv tsv html | Simple tool to create a customizable html file (to be displayed on a web browser) from an AnnotSV output |
| nf-core/mmseqs/createtsv | Process | protein sequence databases clustering searching indexing mmseqs2 tsv | Create a tsv file from a query and a target database as well as the result database |
| nf-core/openms/textexporter | Process | export openms proteomics text tsv | Exports various OpenMS XML formats (featureXML, consensusXML, idXML, mzML) to a human-readable text format. |
| nf-core/panacus/visualize | Process | statistics pangenome graph visualization tsv genomics | Create visualizations from a tsv coverage histogram created with panacus. |
| nf-core/qsv/cat | Process | concatenate tsv csv | Concatenate two or more CSV (or TSV) tables into a single table |