nf-core/pairix @ 0.0.0-0c7146d
Summary
a tool for indexing and querying on a block-compressed text file containing pairs of genomic coordinates
Get started
Add the following snippet to your workflow script to include this module.
include { PAIRIX } from 'nf-core/pairix'
License
MIT License
Process
Name
|
PAIRIX |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
pair
file
|
pair file |
Output
2 channels
#1
index
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
pair
file
|
pair index file *.px2
|
*.px2
file
|
pair index file *.px2
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| pairix | 2D indexing on bgzipped text files of paired genomic coordinates | https://github.com/4dn-dcic/pairix |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:22:42 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fpairix/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/pairix/blobs/sha256:31de0483d71fb6376ff652e07d4724a0a57b13f687b6118601b859a1e9321a1f |
| Size | 2.1 KB |
| Checksum | sha256:31de0483d71fb6376ff652e07d4724a0a57b13f687b6118601b859a1e9321a1f |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:34:47 (UTC) | 3 | 2.0 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:24:55 (UTC) | 4 | 2.1 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:22:42 (UTC) | 4 | 2.1 KB |