Nextflow Registry | nf-core/picard/crosscheckfingerprints@0.0.0-6c4ed3a

nf-core/picard/crosscheckfingerprints @ 0.0.0-6c4ed3a

Checks that all data in the set of input files appear to come from the same individual

alignment metrics statistics fingerprint bam

Latest version: 0.0.0-6c4ed3a

Total downloads: 6

Source: nf-core/modules

Authors: @matthdsm

Maintainers: @matthdsm

Checks that all data in the set of input files appear to come from the same individual

Add the following snippet to your workflow script to include this module.

include { PICARD_CROSSCHECKFINGERPRINTS } from 'nf-core/picard/crosscheckfingerprints'

MIT License

Process

`Name`	`PICARD_CROSSCHECKFINGERPRINTS`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`input1` file	List containing 1 or more bam/vcf files or a file containing filepaths `*.{bam,vcf,vcf.gz,txt,fofn}`
`input1_index` file	List containing 1 or more bam/vcf files indexes `*.{bai,csi,crai,tbi}`
`input2` file	Optional list containing 1 or more bam/vcf files or a file containing filepaths `*.{bam,vcf,vcf.gz,txt,fofn}`
`input2_index` file	List containing 1 or more bam/vcf files indexes `*.{bai,csi,crai,tbi}`
`haplotype_map` file	Haplotype map file `*.{txt,vcf,vcf.gz}`

#2 tuple

`meta2` map	Groovy Map containing reference information e.g. [ id:'genome' ]
`fasta` file	Reference genome file `*.{fasta,fa,fasta.gz,fa.gz}`

Output 2 channels

#1 versions_picard tuple

`${task.process}` string	The process the versions were collected from
`picard` string	The tool name
`picard CrosscheckFingerprints --version 2>&1 \| sed -n 's/.*Version://p'` string	The command used to generate the version of the tool

#2 crosscheck_metrics tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.crosscheck_metrics.txt` file	Metrics created by crosscheckfingerprints `*.{crosscheck_metrics.txt}`

Tool	Description	Homepage
picard	A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.	https://broadinstitute.github.io/picard/

Version	0.0.0-6c4ed3a
Commit ID	6c4ed3a220310b905a1fc9d04f05be2e0837142b
Release Date	23 Apr 2026 15:36:03 (UTC)
Download URL	https://registry.nextflow.io/api/v1/modules/nf-core%2Fpicard%2Fcrosscheckfingerprints/0.0.0-6c4ed3a/download
OCI Store URL	https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/picard/crosscheckfingerprints/blobs/sha256:9786c27232c18adf9f427f2bd2ad58b149a46ea82f0efcc520a19b36a71d949a
Size	3.1 KB
Checksum	sha256:9786c27232c18adf9f427f2bd2ad58b149a46ea82f0efcc520a19b36a71d949a
Downloads	3

Version	Date	Status	Downloads	Size
0.0.0-6c4ed3a	23 Apr 2026 15:36:03 (UTC)		3	3.1 KB
0.0.0-0c7146d	08 Apr 2026 19:25:40 (UTC)		3	3.1 KB