nf-core/plastid/metagene_generate @ 0.0.0-3fc6d40
Summary
Compute a metagene profile of read alignments, counts, or quantitative data over one or more regions of interest, optionally applying a mapping rule
Get started
Add the following snippet to your workflow script to include this module.
include { PLASTID_METAGENE_GENERATE } from 'nf-core/plastid/metagene_generate'
License
MIT License
Name
|
PLASTID_METAGENE_GENERATE |
|---|
meta
map
|
Map containing reference information for the reference genome annotation file e.g. |
|---|---|
annotation
file
|
annotation file of reference genome (BED, bigBed, GTF, GFF3) *.{bed,bigbed,gtf,gff3}
|
rois_bed
tuple
meta
map
|
Map containing reference information for the reference genome annotation file e.g. |
|---|---|
*_rois.bed
file
|
Maximal spanning windows in BED format for visualization in a genome browser. The thickly-rendered portion of a window indicates its landmark. *_rois.bed
|
rois_txt
tuple
meta
map
|
Map containing reference information for the reference genome annotation file e.g. |
|---|---|
*_rois.txt
file
|
Tab-delimited text file describing the maximal spanning window for each gene *_rois.txt
|
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| plastid | Nucleotide-resolution analysis of next-generation sequencing and genomics data | https://github.com/joshuagryphon/plastid |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:26:42 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fplastid%2Fmetagene_generate/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/plastid/metagene_generate/blobs/sha256:29e780ae32729b2e9aa630259eb8d194362d8f2f668f7fa0739b4c89b2dc8b07 |
| Size | 2.6 KB |
| Checksum | sha256:29e780ae32729b2e9aa630259eb8d194362d8f2f668f7fa0739b4c89b2dc8b07 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:37:35 (UTC) | 3 | 2.5 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:26:42 (UTC) | 3 | 2.6 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:26:28 (UTC) | 3 | 2.5 KB |