Nextflow Modules
Showing module(s) with keyword "psite"
| Module | Keywords | Description |
|---|---|---|
| nf-core/plastid/make_wiggle | genomics riboseq psite wiggle bedgraph | Create wiggle or bedGraph files from alignment files after applying a read mapping rule (e.g. to map ribosome-protected footprints at their P-sites), for visualization in a genome browser |
| nf-core/plastid/metagene_generate | genomics riboseq psite | Compute a metagene profile of read alignments, counts, or quantitative data over one or more regions of interest, optionally applying a mapping rule |
| nf-core/plastid/psite | genomics riboseq psite | Estimate position of ribosomal P-site within ribosome profiling read alignments as a function of read length |
| nf-core/ribowaltz | riboseq psite genomics | Calculation of optimal P-site offsets, diagnostic analysis and visual inspection of ribosome profiling data |