nf-core/plink2/pca @ 0.0.0-3fc6d40
Summary
Perform PCA analysis using PLINK
Get started
Add the following snippet to your workflow script to include this module.
include { PLINK2_PCA } from 'nf-core/plink2/pca'
License
MIT License
Process
Name
|
PLINK2_PCA |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
npcs
integer
|
Number of PCs to compute |
use_approx
boolean
|
If true, use the approximate method |
pgen
file
|
PLINK 2 binary genotype table *.{pgen}
|
psam
file
|
PLINK 2 sample information file *.{psam}
|
pvar
file
|
PLINK 2 variant information file *.{pvar}
|
Output
4 channels
#1
evfile
tuple
meta
map
|
Groovy Map containing sample information *.eigenvec
|
|---|---|
*.eigenval
map
|
Groovy Map containing sample information *.eigenval
|
#2
logfile
tuple
meta
map
|
Groovy Map containing sample information *.eigenvec
|
|---|---|
*.log
map
|
Groovy Map containing sample information *.log
|
#3
evecfile
tuple
meta
map
|
Groovy Map containing sample information *.eigenvec
|
|---|---|
*.eigenvec
map
|
Groovy Map containing sample information *.eigenvec
|
#4
versions
versions.yml
file
|
File containing the version of the program versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| plink2 | Whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner | http://www.cog-genomics.org/plink/2.0/ |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:27:08 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fplink2%2Fpca/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/plink2/pca/blobs/sha256:cf1cae0f77c0585b06e42d93a2b59d7af20a5611ffdac38439429e566aeb7c0c |
| Size | 2.6 KB |
| Checksum | sha256:cf1cae0f77c0585b06e42d93a2b59d7af20a5611ffdac38439429e566aeb7c0c |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:38:00 (UTC) | 3 | 2.6 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:27:08 (UTC) | 3 | 2.6 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:27:46 (UTC) | 3 | 2.6 KB |