nf-core/pmdtools/filter @ 0.0.0-3fc6d40
Summary
pmdtools command to filter ancient DNA molecules from others
Get started
Add the following snippet to your workflow script to include this module.
include { PMDTOOLS_FILTER } from 'nf-core/pmdtools/filter'
License
MIT License
Process
Name
|
PMDTOOLS_FILTER |
|---|
Input
3 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
bam
file
|
BAM file *.bam
|
bai
file
|
BAM index file *.bai
|
threshold
float
|
Post-mortem damage score threshold |
|---|
reference
file
|
FASTA file *.{fa,fasta}
|
|---|
Output
2 channels
#1
bam
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.bam
file
|
Filtered BAM file *.bam
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| pmdtools | Compute postmortem damage patterns and decontaminate ancient genomes | https://github.com/pontussk/PMDtools |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:27:15 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fpmdtools%2Ffilter/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/pmdtools/filter/blobs/sha256:478db880410e9c432e4beb9e46762b8543974773093c7e11dc6ed58acb3256ef |
| Size | 2.7 KB |
| Checksum | sha256:478db880410e9c432e4beb9e46762b8543974773093c7e11dc6ed58acb3256ef |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:38:07 (UTC) | 3 | 2.7 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:27:15 (UTC) | 4 | 2.7 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:27:57 (UTC) | 4 | 2.7 KB |